| Element | Representation | |---------|----------------| | Ligand | Thick bonds, atom types labeled (e.g., O, N) | | Protein residues (H-bond) | Complete residue structure, dashed lines with distance | | Protein residues (hydrophobic) | Red arc with "eyebrow" lines, residue name inside | | Water molecules (optional) | Circles with label "W", dashed H-bonds | | Non-interacting residues | Not shown |
ligplot 3ptb.pdb A 201 (where chain A, residue 201 = benzamidine)
| Element | Representation | |---------|----------------| | Ligand | Thick bonds, atom types labeled (e.g., O, N) | | Protein residues (H-bond) | Complete residue structure, dashed lines with distance | | Protein residues (hydrophobic) | Red arc with "eyebrow" lines, residue name inside | | Water molecules (optional) | Circles with label "W", dashed H-bonds | | Non-interacting residues | Not shown |
ligplot 3ptb.pdb A 201 (where chain A, residue 201 = benzamidine)